Adding context dependent gap penalty code into the haplotype likelihood model. Adding ContextCovariate to indel CountCovariates for use in generating k-mer quality tables. Bug fix: make sure to clear the assembly graphs between active regions.

This commit is contained in:
Ryan Poplin 2011-09-28 08:51:50 -04:00
parent eacbee3fe5
commit af0d16e741

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