From aef4be5610210d79d808446cbf3beb00f89a2fa8 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 3 Dec 2009 17:53:36 +0000
Subject: [PATCH] Moved CoarseCoverageWalker to core and packaged both coverage
 walkers in coverage/

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2249 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/coverage}/CoarseCoverageWalker.java                | 2 +-
 .../gatk/walkers/{ => coverage}/DepthOfCoverageWalker.java     | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)
 rename java/src/org/broadinstitute/sting/{playground/gatk/walkers => gatk/walkers/coverage}/CoarseCoverageWalker.java (97%)
 rename java/src/org/broadinstitute/sting/gatk/walkers/{ => coverage}/DepthOfCoverageWalker.java (99%)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoarseCoverageWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/CoarseCoverageWalker.java
similarity index 97%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/CoarseCoverageWalker.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/coverage/CoarseCoverageWalker.java
index 3d91a6b4d..a6b0b759f 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoarseCoverageWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/CoarseCoverageWalker.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers;
+package org.broadinstitute.sting.gatk.walkers.coverage;
 
 import net.sf.samtools.SAMRecord;
 
diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
index f14221049..835b3ab25 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
@@ -22,8 +22,9 @@
  * OTHER DEALINGS IN THE SOFTWARE.
  */
 
-package org.broadinstitute.sting.gatk.walkers;
+package org.broadinstitute.sting.gatk.walkers.coverage;
 
+import org.broadinstitute.sting.gatk.walkers.*;
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
 import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker;