Fix broken pipeline test (replacing PASS with .)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5242 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-15 02:19:18 +00:00 · 2011-02-15 02:19:18 +00:00 · aeee41a755
parent 851b3e71f9
commit aeee41a755
1 changed files with 2 additions and 2 deletions
--- a/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSites.scala
+++ b/scala/src/org/broadinstitute/sting/queue/library/ipf/vcf/VCFExtractSites.scala
@ -27,7 +27,7 @@ class VCFExtractSites( vcf: File, output: File) extends InProcessFunction {
        buf.append("\t.")
      }

-      buf.append("\t.")
+      buf.append("\tPASS")

      if ( keepInfo ) {
        buf.append("\t%s".format(spline(7)))
@ -71,4 +71,4 @@ class VCFExtractSites( vcf: File, output: File) extends InProcessFunction {
    w.close
  }

-}
+}