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Merged bug fix from Stable into Unstable

This commit is contained in:
David Roazen 2011-10-11 12:26:08 -04:00
parent cfd0ac8410 794f275871
commit ae83420637
2 changed files with 5 additions and 2 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/SnpEff.java
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@ -31,8 +31,8 @@ import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker;
import org.broadinstitute.sting.gatk.walkers.annotator.interfaces.AnnotatorCompatibleWalker;
import org.broadinstitute.sting.gatk.walkers.annotator.interfaces.ExperimentalAnnotation;
import org.broadinstitute.sting.gatk.walkers.annotator.interfaces.InfoFieldAnnotation;
import org.broadinstitute.sting.gatk.walkers.annotator.interfaces.RodRequiringAnnotation;
import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.codecs.vcf.*;
import org.broadinstitute.sting.utils.exceptions.UserException;
@ -50,7 +50,7 @@ import java.util.*;
*
* @author David Roazen
*/
public class SnpEff extends InfoFieldAnnotation implements ExperimentalAnnotation {
public class SnpEff extends InfoFieldAnnotation implements RodRequiringAnnotation {
private static Logger logger = Logger.getLogger(SnpEff.class);

3
public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/interfaces/RodRequiringAnnotation.java 100644
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@ -0,0 +1,3 @@
package org.broadinstitute.sting.gatk.walkers.annotator.interfaces;
public interface RodRequiringAnnotation extends AnnotationType {}