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Getting rid of a few extra, very explicit qualifications so that the public/ 

private bifurcation script doesn't have to discover them.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5956 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2011-06-08 03:08:47 +00:00
parent bb6c0db783
commit ad97099df6
2 changed files with 2 additions and 3 deletions
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4
java/src/org/broadinstitute/sting/oneoffprojects/walkers/IndelCountCovariates/Dinuc.java
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@ -31,7 +31,7 @@ package org.broadinstitute.sting.oneoffprojects.walkers.IndelCountCovariates;
* Date: Nov 16, 2009 * Date: Nov 16, 2009
*/ */
//public class Dinuc implements Comparable<org.broadinstitute.sting.gatk.walkers.recalibration.Dinuc>{ //public class Dinuc implements Comparable<org.broadinstitute.sting.gatk.walkers.recalibration.Dinuc>{
public class Dinuc implements Comparable<org.broadinstitute.sting.oneoffprojects.walkers.IndelCountCovariates.Dinuc>{ public class Dinuc implements Comparable<Dinuc>{
private byte first; private byte first;
private byte second; private byte second;
@ -50,7 +50,7 @@ public class Dinuc implements Comparable<org.broadinstitute.sting.oneoffprojects
second = _second; second = _second;
} }
public int compareTo(final org.broadinstitute.sting.oneoffprojects.walkers.IndelCountCovariates.Dinuc that) { public int compareTo(final Dinuc that) {
if( this.first > that.first ) { return 1; } if( this.first > that.first ) { return 1; }
else if( this.first < that.first ) { return -1; } else if( this.first < that.first ) { return -1; }
else { //this.first equals that.first else { //this.first equals that.first

1
java/src/org/broadinstitute/sting/playground/gatk/walkers/reducereads/BaseCounts.java
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@ -1,6 +1,5 @@
package org.broadinstitute.sting.playground.gatk.walkers.reducereads; package org.broadinstitute.sting.playground.gatk.walkers.reducereads;
import org.broadinstitute.sting.alignment.reference.bwt.Counts;
import org.broadinstitute.sting.utils.BaseUtils; import org.broadinstitute.sting.utils.BaseUtils;
import com.google.java.contract.*; import com.google.java.contract.*;