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forgot to change the chunks dir to shards before 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@241 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-03-31 20:28:20 +00:00
parent ede52f7359
commit ad63633b1c
6 changed files with 6 additions and 6 deletions
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2
java/src/org/broadinstitute/sting/gatk/dataSources/DataSource.java
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@ -1,6 +1,6 @@
package org.broadinstitute.sting.gatk.dataSources; package org.broadinstitute.sting.gatk.dataSources;
import org.broadinstitute.sting.gatk.dataSources.chunks.DataShard; import org.broadinstitute.sting.gatk.dataSources.shards.DataShard;
/** /**
* User: aaron * User: aaron

2
java/src/org/broadinstitute/sting/gatk/dataSources/chunks/BasicDataShard.java → java/src/org/broadinstitute/sting/gatk/dataSources/shards/BasicDataShard.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.gatk.dataSources.chunks; package org.broadinstitute.sting.gatk.dataSources.shards;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.List; import java.util.List;

2
java/src/org/broadinstitute/sting/gatk/dataSources/chunks/DataShard.java → java/src/org/broadinstitute/sting/gatk/dataSources/shards/DataShard.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.gatk.dataSources.chunks; package org.broadinstitute.sting.gatk.dataSources.shards;
import java.util.Iterator; import java.util.Iterator;

2
java/src/org/broadinstitute/sting/gatk/dataSources/chunks/LociShard.java → java/src/org/broadinstitute/sting/gatk/dataSources/shards/LociShard.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.gatk.dataSources.chunks; package org.broadinstitute.sting.gatk.dataSources.shards;
import org.broadinstitute.sting.gatk.LocusContext; import org.broadinstitute.sting.gatk.LocusContext;
import org.broadinstitute.sting.gatk.dataSources.datum.LocusDatum; import org.broadinstitute.sting.gatk.dataSources.datum.LocusDatum;

2
java/src/org/broadinstitute/sting/gatk/dataSources/chunks/ReadShard.java → java/src/org/broadinstitute/sting/gatk/dataSources/shards/ReadShard.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.gatk.dataSources.chunks; package org.broadinstitute.sting.gatk.dataSources.shards;
import edu.mit.broad.picard.sam.MergingSamRecordIterator; import edu.mit.broad.picard.sam.MergingSamRecordIterator;
import org.broadinstitute.sting.gatk.dataSources.datum.ReadDatum; import org.broadinstitute.sting.gatk.dataSources.datum.ReadDatum;

2
java/src/org/broadinstitute/sting/gatk/dataSources/chunks/SAMDataShard.java → java/src/org/broadinstitute/sting/gatk/dataSources/shards/SAMDataShard.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.gatk.dataSources.chunks; package org.broadinstitute.sting.gatk.dataSources.shards;
import edu.mit.broad.picard.sam.MergingSamRecordIterator; import edu.mit.broad.picard.sam.MergingSamRecordIterator;
import net.sf.samtools.SAMRecord; import net.sf.samtools.SAMRecord;