From ad549eacfd6c07984bb45f530968eaf8049f8c58 Mon Sep 17 00:00:00 2001 From: asivache Date: Wed, 30 Dec 2009 22:00:58 +0000 Subject: [PATCH] Now that we changed how deletions are represented, got to update MD5... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2491 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/PileupWalkerIntegrationTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java index 4a73efbb6..a2b15ef29 100644 --- a/java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java @@ -29,7 +29,7 @@ public class PileupWalkerIntegrationTest extends WalkerTest { String gatk_args = "-T Pileup -I " + validationDataLocation + "OV-0930.normal.chunk.bam " + "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta" + " -show_indels -o %s"; - String expected_md5="afc9ef7f4668e82d0bf88ab8916944f4"; + String expected_md5="06eedc2e7927650961d99d703f4301a4"; WalkerTestSpec spec = new WalkerTestSpec(gatk_args,1,Arrays.asList(expected_md5)); executeTest("Testing the extended pileup with indel records included on a small chunk of Ovarian dataset with 20 indels (1 D, 19 I)", spec);