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Now that we changed how deletions are represented, got to update MD5... 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2491 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2009-12-30 22:00:58 +00:00
parent 46362ce532
commit ad549eacfd
1 changed files with 1 additions and 1 deletions
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2
java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java
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@ -29,7 +29,7 @@ public class PileupWalkerIntegrationTest extends WalkerTest {
String gatk_args = "-T Pileup -I " + validationDataLocation + "OV-0930.normal.chunk.bam "
+ "-R " + seqLocation + "references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta"
+ " -show_indels -o %s";
String expected_md5="afc9ef7f4668e82d0bf88ab8916944f4";
String expected_md5="06eedc2e7927650961d99d703f4301a4";
WalkerTestSpec spec = new WalkerTestSpec(gatk_args,1,Arrays.asList(expected_md5));
executeTest("Testing the extended pileup with indel records included on a small chunk of Ovarian dataset with 20 indels (1 D, 19 I)", spec);