From acf90ca0276bd953d0f6ae1c5e136b8ff3c3439f Mon Sep 17 00:00:00 2001 From: Francesco Date: Thu, 27 Jun 2013 11:08:59 +0200 Subject: [PATCH] corrected number of arguments passed to PbsEngineJobRunner when requesting multiple cores Signed-off-by: Khalid Shakir --- .../sting/queue/engine/pbsengine/PbsEngineJobRunner.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/scala/src/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala b/public/scala/src/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala index fb00fe21f..366e4cc29 100644 --- a/public/scala/src/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala +++ b/public/scala/src/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala @@ -66,7 +66,7 @@ class PbsEngineJobRunner(session: Session, function: CommandLineFunction) extend logger.warn("Sending multicore job %s to farm without requesting appropriate number of cores (%d)".format( function.shortDescription, function.nCoresRequest.get)) else - nativeSpec += " -l nodes=1:ppn=%d".format(function.qSettings.parallelEnvironmentName, function.nCoresRequest.get) + nativeSpec += " -l nodes=1:ppn=%d".format(function.nCoresRequest.get) } // Pass on any job resource requests