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Updated FCPTest to use the new path to fullCallingPipeline.q changed in r5017. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5027 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2011-01-19 21:43:43 +00:00
parent 22582960be
commit acc2f1c9fe
1 changed files with 1 additions and 1 deletions
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2
scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala
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@ -90,7 +90,7 @@ class FullCallingPipelineTest extends BaseTest {
var cleanType = "cleaned"
// Run the pipeline with the expected inputs.
var pipelineCommand = ("-retry 1 -S scala/qscript/fullCallingPipeline.q" +
var pipelineCommand = ("-retry 1 -S scala/qscript/playground/fullCallingPipeline.q" +
" -jobProject %s -Y %s -refseqTable %s" +
" --gatkjar %s/dist/GenomeAnalysisTK.jar")
.format(projectName, yamlFile, dataset.refseq, new File(".").getAbsolutePath)