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a bug fix for Kiran; putting JIRA in for better type determination system for the new Tribble tracks so this doesn't happen again. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3318 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-05-07 03:31:43 +00:00
parent 4e0019b04f
commit ac9b32db88
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/utils/SampleUtils.java
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@ -80,7 +80,7 @@ public class SampleUtils {
List<ReferenceOrderedDataSource> dataSources = toolkit.getRodDataSources(); List<ReferenceOrderedDataSource> dataSources = toolkit.getRodDataSources();
for ( ReferenceOrderedDataSource source : dataSources ) { for ( ReferenceOrderedDataSource source : dataSources ) {
RMDTrack rod = source.getReferenceOrderedData(); RMDTrack rod = source.getReferenceOrderedData();
if ( rod.getType().equals(VCFRecord.class) ) { if ( rod.getType().equals(VCFCodec.class) ) {
VCFReader reader = new VCFReader(rod.getFile()); VCFReader reader = new VCFReader(rod.getFile());
samples.addAll(reader.getHeader().getGenotypeSamples()); samples.addAll(reader.getHeader().getGenotypeSamples());
reader.close(); reader.close();