From ac9b32db8847765abedab67a08c56cbe0e8480dd Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 7 May 2010 03:31:43 +0000
Subject: [PATCH] a bug fix for Kiran; putting JIRA in for better type
 determination system for the new Tribble tracks so this doesn't happen again.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3318 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/utils/SampleUtils.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/utils/SampleUtils.java b/java/src/org/broadinstitute/sting/utils/SampleUtils.java
index 1a1cb42bc..ec26d5fde 100755
--- a/java/src/org/broadinstitute/sting/utils/SampleUtils.java
+++ b/java/src/org/broadinstitute/sting/utils/SampleUtils.java
@@ -80,7 +80,7 @@ public class SampleUtils {
         List<ReferenceOrderedDataSource> dataSources = toolkit.getRodDataSources();
         for ( ReferenceOrderedDataSource source : dataSources ) {
             RMDTrack rod = source.getReferenceOrderedData();
-            if ( rod.getType().equals(VCFRecord.class) ) {
+            if ( rod.getType().equals(VCFCodec.class) ) {
                 VCFReader reader = new VCFReader(rod.getFile());
                 samples.addAll(reader.getHeader().getGenotypeSamples());
                 reader.close();