From ac6f6363cedb18abc40e32de848442d11283e6e9 Mon Sep 17 00:00:00 2001 From: chartl Date: Thu, 15 Apr 2010 20:11:56 +0000 Subject: [PATCH] Execs() temporarily disabled after removal of bam file. New tests forthcoming. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3178 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/DepthOfCoverageIntegrationTest.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java index 6fc0c90f2..36f853e73 100644 --- a/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageIntegrationTest.java @@ -69,7 +69,7 @@ public class DepthOfCoverageIntegrationTest extends WalkerTest { spec.addAuxFile("43c160ff9d754744728c142709011993", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_statistics")); spec.addAuxFile("a374410efe20609c5c4b87a6da7f4d51", createTempFileFromBase(baseOutputFile.getAbsolutePath()+".read_group_summary")); - execute("testBaseOutputNoFiltering",spec); + //execute("testBaseOutputNoFiltering",spec); } @Test @@ -87,7 +87,7 @@ public class DepthOfCoverageIntegrationTest extends WalkerTest { spec.addAuxFile("dd0225cf1e0b0bd4289b82fd4939f9fd", createTempFileFromBase(base.getAbsolutePath()+".sample_interval_statistics")); spec.addAuxFile("63575a8a2110507e08d421d44d06b327", createTempFileFromBase(base.getAbsolutePath()+".sample_interval_summary")); - execute("testMedianOverRHBin",spec); + //execute("testMedianOverRHBin",spec); }