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Bugfix for GSA-540 / Update metadata maps when adding lines to VCFHeader 

-- https://jira.broadinstitute.org/browse/GSA-540
-- http://gatkforums.broadinstitute.org/discussion/1433/possible-bug-and-fix-in-java-code-of-vcfheader-org-broadinstitute-sting-utils-codecs-vcf-vcfheader
This commit is contained in:
Mark DePristo 2012-10-26 16:34:07 -04:00
parent fa9b2a91d0
commit ac5e58a265
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFHeader.java
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@ -159,6 +159,7 @@ public class VCFHeader {
*/
public void addMetaDataLine(VCFHeaderLine headerLine) {
mMetaData.add(headerLine);
loadMetaDataMaps();
}
/**
@ -236,7 +237,6 @@ public class VCFHeader {
+ VCFConstants.GENOTYPE_PL_KEY + " field. As the GATK now only manages PL fields internally"
+ " automatically adding a corresponding PL field to your VCF header");
addMetaDataLine(new VCFFormatHeaderLine(VCFConstants.GENOTYPE_PL_KEY, VCFHeaderLineCount.G, VCFHeaderLineType.Integer, "Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"));
loadMetaDataMaps();
}
}