From ac3895c2183a2e97ea8f72a96b45c97264be6b1c Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 3 Dec 2009 19:11:53 +0000
Subject: [PATCH] Update the location of the DepthOfCoverage tool in the
 packaging system.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2250 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GenomeAnalysisTK.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml
index 860c8b54c..b545826f1 100644
--- a/packages/GenomeAnalysisTK.xml
+++ b/packages/GenomeAnalysisTK.xml
@@ -8,7 +8,7 @@
       <package>org.broadinstitute.sting.gatk.filters</package>
       <class>org.broadinstitute.sting.gatk.walkers.CountLociWalker</class>
       <class>org.broadinstitute.sting.gatk.walkers.CountReadsWalker</class>
-      <class>org.broadinstitute.sting.gatk.walkers.DepthOfCoverageWalker</class>
+      <class>org.broadinstitute.sting.gatk.walkers.coverage.DepthOfCoverageWalker</class>
       <class>org.broadinstitute.sting.gatk.walkers.PileupWalker</class>
       <class>org.broadinstitute.sting.gatk.walkers.PrintReadsWalker</class>
       <class>org.broadinstitute.sting.gatk.walkers.qc.ValidatingPileupWalker</class>
@@ -68,7 +68,7 @@
     <!-- GATK sample code and build scripts -->
     <file>java/src/org/broadinstitute/sting/gatk/walkers/CountReadsWalker.java</file>
     <file>java/src/org/broadinstitute/sting/gatk/walkers/CountLociWalker.java</file>
-    <file>java/src/org/broadinstitute/sting/gatk/walkers/DepthOfCoverageWalker.java</file>
+    <file>java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java</file>
     <file>java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java</file>
     <file>java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java</file>
     <file>java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupWalker.java</file>