diff --git a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegions.java b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegions.java index 562a6d1d0..769bec720 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegions.java +++ b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegions.java @@ -216,7 +216,7 @@ public class TraverseActiveRegions extends TraversalEngine integrateActiveList( final ArrayList activeList, final GenomeLoc firstIsActiveStart, final int activeRegionExtension ) { - final double ACTIVE_PROB_THRESHOLD = 0.2; + final double ACTIVE_PROB_THRESHOLD = 0.2; // BUGBUG: needs to be set-able by the walker author final ArrayList returnList = new ArrayList(); if( activeList.size() == 0 ) { return returnList; @@ -227,8 +227,8 @@ public class TraverseActiveRegions extends TraversalEngine