diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/LiftoverVariantsIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/LiftoverVariantsIntegrationTest.java
index 005e7df2b..1dfdf5831 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/LiftoverVariantsIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/LiftoverVariantsIntegrationTest.java
@@ -44,6 +44,15 @@ public class LiftoverVariantsIntegrationTest extends WalkerTest {
          executeTest("test b36 to hg19", spec);
     }
 
+    @Test
+    public void testb36Tohg19UnsortedSamples() {
+         WalkerTestSpec spec = new WalkerTestSpec(
+                 "-T LiftoverVariants -o %s -R " + b36KGReference + " -B:variant,vcf " + validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.500.noheader.unsortedSamples.vcf -chain " + validationDataLocation + "b36ToHg19.broad.over.chain -dict /seq/references/Homo_sapiens_assembly19/v0/Homo_sapiens_assembly19.dict",
+                 1,
+                 Arrays.asList("b6ef4a2f026fd3843aeb9ed764a66921"));
+         executeTest("test b36 to hg19, unsorted samples", spec);
+    }
+
     @Test
     public void testhg18Tohg19Unsorted() {
          WalkerTestSpec spec = new WalkerTestSpec(