From ab75b08ea7f9353e2b0fec0e52ff8dbbbee7db8c Mon Sep 17 00:00:00 2001 From: Ron Levine Date: Fri, 17 Feb 2017 12:21:51 -0500 Subject: [PATCH] Remove unused compressed_block_size and close BlockCompressedInputStream --- .../engine/datasources/reads/utilities/UnzipSingleBlock.java | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/datasources/reads/utilities/UnzipSingleBlock.java b/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/datasources/reads/utilities/UnzipSingleBlock.java index c65a7e4ce..662babdf2 100644 --- a/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/datasources/reads/utilities/UnzipSingleBlock.java +++ b/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/datasources/reads/utilities/UnzipSingleBlock.java @@ -39,15 +39,13 @@ public class UnzipSingleBlock extends CommandLineProgram { @Input(fullName = "block_file", shortName = "b", doc = "block file over which to test unzipping", required = true) private File blockFile; - @Input(fullName = "compressed_block_size", shortName = "cbs", doc = "size of compressed block", required = true) - private int compressedBufferSize; - public int execute() throws IOException { final byte[] uncompressedBuffer = new byte[65536]; final BlockCompressedInputStream gunzipper = new BlockCompressedInputStream(blockFile); gunzipper.setCheckCrcs(true); gunzipper.read(uncompressedBuffer); + gunzipper.close(); System.out.printf("SUCCESS!%n");