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PED support for Inbreeding Coefficient annotation 

Signed-off-by: Eric Banks <ebanks@broadinstitute.org>
This commit is contained in:
Laurent Francioli 2012-04-25 16:51:16 +02:00 committed by Eric Banks
parent 219b0a128b
commit ab2a952ad1
1 changed files with 1 additions and 1 deletions
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2
public/java/test/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorIntegrationTest.java
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@ -184,7 +184,7 @@ public class VariantAnnotatorIntegrationTest extends WalkerTest {
"-T VariantAnnotator -R " + b37KGReference + " -A TransmissionDisequilibriumTest --variant:vcf " + validationDataLocation + "ug.random50000.subset300bp.chr1.family.vcf" + "-T VariantAnnotator -R " + b37KGReference + " -A TransmissionDisequilibriumTest --variant:vcf " + validationDataLocation + "ug.random50000.subset300bp.chr1.family.vcf" +
" -L " + validationDataLocation + "ug.random50000.subset300bp.chr1.family.vcf -NO_HEADER -ped " + validationDataLocation + "ug.random50000.family.ped -o %s", 1, " -L " + validationDataLocation + "ug.random50000.subset300bp.chr1.family.vcf -NO_HEADER -ped " + validationDataLocation + "ug.random50000.family.ped -o %s", 1,
Arrays.asList(MD5)); Arrays.asList(MD5));
executeTest("Testing TDT annotation", spec); executeTest("Testing TDT annotation ", spec);
} }