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queueJobReport now compresses PDF when running R 2.13+. 

Updated PostCallingQC.scala's VE and R to include missense to silent ratio and plot.
This commit is contained in:
Khalid Shakir 2012-01-10 17:32:30 -05:00
parent a9a6516527
commit aae61767c6
1 changed files with 7 additions and 3 deletions
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8
public/R/scripts/org/broadinstitute/sting/queue/util/queueJobReport.R
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@ -1,6 +1,7 @@
library(gsalib) library(gsalib)
require("ggplot2") library(ggplot2)
require("gplots") library(gplots)
library(tools)
# #
# Standard command line switch. Can we loaded interactively for development # Standard command line switch. Can we loaded interactively for development
@ -201,4 +202,7 @@ for ( group in gatkReportData ) {
if ( ! is.na(outputPDF) ) { if ( ! is.na(outputPDF) ) {
dev.off() dev.off()
if (exists("compactPDF")) {
compactPDF(outputPDF)
}
} }