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No need to sort the BQSR tables by default.

This commit is contained in:
Ryan Poplin 2013-01-28 11:26:01 -05:00
parent f63f27aa13
commit aab160372a
1 changed files with 1 additions and 1 deletions
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2
protected/java/src/org/broadinstitute/sting/utils/recalibration/RecalUtils.java
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@ -310,7 +310,7 @@ public class RecalUtils {
if(sortByCols) { if(sortByCols) {
reportTable = new GATKReportTable("RecalTable" + reportTableIndex++, "", columnNames.size(), GATKReportTable.TableSortingWay.SORT_BY_COLUMN); reportTable = new GATKReportTable("RecalTable" + reportTableIndex++, "", columnNames.size(), GATKReportTable.TableSortingWay.SORT_BY_COLUMN);
} else { } else {
reportTable = new GATKReportTable("RecalTable" + reportTableIndex++, "", columnNames.size()); reportTable = new GATKReportTable("RecalTable" + reportTableIndex++, "", columnNames.size(), GATKReportTable.TableSortingWay.DO_NOT_SORT);
} }
for (final Pair<String, String> columnName : columnNames) for (final Pair<String, String> columnName : columnNames)
reportTable.addColumn(columnName.getFirst(), columnName.getSecond()); reportTable.addColumn(columnName.getFirst(), columnName.getSecond());