diff --git a/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/SimpleDeBruijnAssembler.java b/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/SimpleDeBruijnAssembler.java index a7a1630d4..fd46e4e69 100755 --- a/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/SimpleDeBruijnAssembler.java +++ b/protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/SimpleDeBruijnAssembler.java @@ -184,7 +184,7 @@ public class SimpleDeBruijnAssembler extends LocalAssemblyEngine { for( final GATKSAMRecord read : reads ) { final byte[] sequence = read.getReadBases(); final byte[] qualities = read.getBaseQualities(); - final byte[] reducedReadCounts = read.getReducedReadCounts(); // will be null if read is not readuced + final byte[] reducedReadCounts = read.getReducedReadCounts(); // will be null if read is not reduced if( sequence.length > KMER_LENGTH + KMER_OVERLAP ) { final int kmersInSequence = sequence.length - KMER_LENGTH + 1; for( int iii = 0; iii < kmersInSequence - 1; iii++ ) {