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fixing typo

This commit is contained in:
Ryan Poplin 2012-09-10 13:36:37 -04:00
parent a13e645854
commit aa9829b55c
1 changed files with 1 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/SimpleDeBruijnAssembler.java
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@ -184,7 +184,7 @@ public class SimpleDeBruijnAssembler extends LocalAssemblyEngine {
for( final GATKSAMRecord read : reads ) {
final byte[] sequence = read.getReadBases();
final byte[] qualities = read.getBaseQualities();
final byte[] reducedReadCounts = read.getReducedReadCounts(); // will be null if read is not readuced
final byte[] reducedReadCounts = read.getReducedReadCounts(); // will be null if read is not reduced
if( sequence.length > KMER_LENGTH + KMER_OVERLAP ) {
final int kmersInSequence = sequence.length - KMER_LENGTH + 1;
for( int iii = 0; iii < kmersInSequence - 1; iii++ ) {