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Switched VQSR tranches plot ordering rule

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Geraldine Van der Auwera 2015-03-12 19:57:03 -04:00
parent 5673ba9209
commit aa4084d42f
1 changed files with 1 additions and 1 deletions
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2
public/gatk-tools-public/src/main/resources/org/broadinstitute/gatk/tools/walkers/variantrecalibration/plot_Tranches.R
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@ -41,7 +41,7 @@ leftShift <- function(x, leftValue = 0) {
# Tranches plot
# -----------------------------------------------------------------------------------------------
data2 = read.table(tranchesFile,sep=",",head=T)
data2 = data2[order(data2$novelTiTv, decreasing=F),]
data2 = data2[order(data2$targetTruthSensitivity, decreasing=T),]
#data2 = data2[order(data2$FDRtranche, decreasing=T),]
cols = c("cornflowerblue", "cornflowerblue", "darkorange", "darkorange")
density=c(20, -1, -1, 20)