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Another round of FindBugs fixes. Inefficient use of keySet iterator instead of entrySet iterator.

This commit is contained in:
Ryan Poplin 2012-08-20 16:11:45 -04:00
parent 5db3bd6fd2
commit a9472c1980
1 changed files with 2 additions and 2 deletions
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4
protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java
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@ -77,10 +77,10 @@ public class LikelihoodCalculationEngine {
PairHMM.initializeArrays(matchMetricArray, XMetricArray, YMetricArray, X_METRIC_LENGTH); PairHMM.initializeArrays(matchMetricArray, XMetricArray, YMetricArray, X_METRIC_LENGTH);
// for each sample's reads // for each sample's reads
for( final String sample : perSampleReadList.keySet() ) { for( final Map.Entry<String, ArrayList<GATKSAMRecord>> sampleEntry : perSampleReadList.entrySet() ) {
//if( DEBUG ) { System.out.println("Evaluating sample " + sample + " with " + perSampleReadList.get( sample ).size() + " passing reads"); } //if( DEBUG ) { System.out.println("Evaluating sample " + sample + " with " + perSampleReadList.get( sample ).size() + " passing reads"); }
// evaluate the likelihood of the reads given those haplotypes // evaluate the likelihood of the reads given those haplotypes
computeReadLikelihoods( haplotypes, perSampleReadList.get(sample), sample, matchMetricArray, XMetricArray, YMetricArray ); computeReadLikelihoods( haplotypes, sampleEntry.getValue(), sampleEntry.getKey(), matchMetricArray, XMetricArray, YMetricArray );
} }
} }