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Bug fix for Ryan: check for no context

This commit is contained in:
Eric Banks 2011-08-20 22:49:51 -04:00
parent 0ccd173967
commit a8cbced71b
2 changed files with 4 additions and 3 deletions
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3
public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java
View File

@ -311,7 +311,8 @@ public class VariantEvalWalker extends RodWalker<Integer, Integer> implements Tr
// for each comp track // for each comp track
for ( final RodBinding<VariantContext> compRod : comps ) { for ( final RodBinding<VariantContext> compRod : comps ) {
// no sample stratification for comps // no sample stratification for comps
final Set<VariantContext> compSet = compVCs.get(compRod) == null ? new HashSet<VariantContext>(0) : compVCs.get(compRod).values().iterator().next(); final HashMap<String, Set<VariantContext>> compSetHash = compVCs.get(compRod);
final Set<VariantContext> compSet = (compSetHash == null || compSetHash.size() == 0) ? new HashSet<VariantContext>(0) : compVCs.get(compRod).values().iterator().next();
// find the comp // find the comp
final VariantContext comp = findMatchingComp(eval, compSet); final VariantContext comp = findMatchingComp(eval, compSet);

4
public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/util/VariantEvalUtils.java
View File

@ -347,9 +347,9 @@ public class VariantEvalUtils {
} }
} }
} }
bindings.put(track, mapping);
} }
bindings.put(track, mapping);
} }
return bindings; return bindings;