From a893765ae2aebaf8420962e6f5b1f1ba6ee1e556 Mon Sep 17 00:00:00 2001
From: Karthik Gururaj <karthik.gururaj@intel.com>
Date: Mon, 3 Mar 2014 09:11:02 -0800
Subject: [PATCH] Added license to Makefile

---
 public/VectorPairHMM/src/main/c++/Makefile    |  40 +++++++++---------
 .../utils/pairhmm/libVectorLoglessPairHMM.so  | Bin 443803 -> 443803 bytes
 2 files changed, 20 insertions(+), 20 deletions(-)

diff --git a/public/VectorPairHMM/src/main/c++/Makefile b/public/VectorPairHMM/src/main/c++/Makefile
index 7296b7026..354bca0bb 100644
--- a/public/VectorPairHMM/src/main/c++/Makefile
+++ b/public/VectorPairHMM/src/main/c++/Makefile
@@ -1,26 +1,26 @@
-/*Copyright (c) 2012 The Broad Institute
+#Copyright (c) 2012 The Broad Institute
 
-*Permission is hereby granted, free of charge, to any person
-*obtaining a copy of this software and associated documentation
-*files (the "Software"), to deal in the Software without
-*restriction, including without limitation the rights to use,
-*copy, modify, merge, publish, distribute, sublicense, and/or sell
-*copies of the Software, and to permit persons to whom the
-*Software is furnished to do so, subject to the following
-*conditions:
+#Permission is hereby granted, free of charge, to any person
+#obtaining a copy of this software and associated documentation
+#files (the "Software"), to deal in the Software without
+#restriction, including without limitation the rights to use,
+#copy, modify, merge, publish, distribute, sublicense, and/or sell
+#copies of the Software, and to permit persons to whom the
+#Software is furnished to do so, subject to the following
+#conditions:
 
-*The above copyright notice and this permission notice shall be
-*included in all copies or substantial portions of the Software.
+#The above copyright notice and this permission notice shall be
+#included in all copies or substantial portions of the Software.
 
-*THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-*EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
-*OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-*NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
-*HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
-*WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
-*FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
-*THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-*/
+#THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+#EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+#OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+#NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+#HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+#WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+#FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
+#THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+#
 
 
 #OMPCFLAGS=-fopenmp
diff --git a/public/sting-utils/src/main/resources/org/broadinstitute/sting/utils/pairhmm/libVectorLoglessPairHMM.so b/public/sting-utils/src/main/resources/org/broadinstitute/sting/utils/pairhmm/libVectorLoglessPairHMM.so
index 17cec8be400bc0847030f66d645762ac3c3e3ea2..2620557f0cf685ba9e238d5db4bded7d2d28aad2 100644
GIT binary patch
delta 239
zcmbQ;Ej_zidcy)nk&BPthfJL^C+(B@r=;%Xi7wll3wSqgVdP&N=fuFk;L*!#WW&Vp
zBJ}3}{~o=z|LmB6LZ+8(nHYB2L8OI2(q<6p<q+vDAZcre^cQQOv^YfC2O>QcByBNS
zaj6`m>0}2WX*4+=Na|0n1Cn~1=Pq?HVN98P@1{0m=4P&28LW(IlZ)>+Gl?^9{&9aZ
zFXP<FYu?H+&Y64~NY0-83P{e{%=u1bCF8Vqz3GfV%ml>DK+FQftlRabv*qdm0As~l
AXaE2J

delta 239
zcmbQ;Ej_zidcy)nk*cUi$<vSah1U7h<<C3syE^S`P}k-yjQoq^G#MBeJbHPJY?v5c
zgx>uB-=o*|pB)oW$n>%;6T>c5h_o<B+6*GS93s61B&`II{$dT37KcdtK%}RFq~#|o
zE|p`Hnd|^0B`3!NNwLXwKvHz`+@%gCjNX&)-PC3b*vxe+gO!nYa`F9Urhg2Zf85{9
z%h)n`&09If=E<jlWYgqVK(cW&=R1{^jJ550(;0!735c12m<5Pgx9d%3%hdw_Zq!;7