zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Update md5s for BAM header version change in Queue test output

This commit is contained in:
Laura Gauthier 2015-08-28 11:05:10 -04:00
parent 13c5a74cc7
commit a86f3909ca
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
public/gatk-queue-extensions-public/src/test/scala/org/broadinstitute/gatk/queue/extensions/gatk/QueueFeaturesQueueTest.scala
View File

@ -43,7 +43,7 @@ class QueueFeaturesQueueTest {
" -R " + BaseTest.publicTestDir + "exampleFASTA.fasta", " -R " + BaseTest.publicTestDir + "exampleFASTA.fasta",
" -I " + BaseTest.publicTestDir + "exampleBAM_with_unmapped.bam", " -I " + BaseTest.publicTestDir + "exampleBAM_with_unmapped.bam",
" -out " + testOut).mkString " -out " + testOut).mkString
spec.fileMD5s += testOut -> "c7f086293509b1c506f7a25b13754637" spec.fileMD5s += testOut -> "4ddbae75782f34244612d28b3542f2ad"
QueueTest.executeTest(spec) QueueTest.executeTest(spec)
//Second case: When intervals are explicitly provided, unmapped reads should not be included //Second case: When intervals are explicitly provided, unmapped reads should not be included
@ -56,7 +56,7 @@ class QueueFeaturesQueueTest {
" -I " + BaseTest.publicTestDir + "exampleBAM_with_unmapped.bam", " -I " + BaseTest.publicTestDir + "exampleBAM_with_unmapped.bam",
" -L chr1", " -L chr1",
" -out " + testOut2).mkString " -out " + testOut2).mkString
spec2.fileMD5s += testOut2 -> "44bda07e3421a79c56213900ad3f7d7c" spec2.fileMD5s += testOut2 -> "b3e92a9ed0f420ddfa87e93a9120251a"
QueueTest.executeTest(spec2) QueueTest.executeTest(spec2)
} }