From a815e875a8b8ee3f2aa5c7eedf5bc37b32760c07 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Thu, 22 Dec 2011 15:49:11 -0500
Subject: [PATCH] Removing debugging output

---
 .../sting/gatk/datasources/reference/ReferenceDataSource.java   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/datasources/reference/ReferenceDataSource.java b/public/java/src/org/broadinstitute/sting/gatk/datasources/reference/ReferenceDataSource.java
index b6c6a7564..be33a5691 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/datasources/reference/ReferenceDataSource.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/datasources/reference/ReferenceDataSource.java
@@ -269,7 +269,7 @@ public class ReferenceDataSource {
     }
 
     private static Shard createShardFromInterval(final GenomeLoc interval, final SAMDataSource readsDataSource, final GenomeLocParser parser) {
-        System.out.println("Adding shard " + interval);
+        //logger.debug("Adding shard " + interval);
         return new LocusShard(parser,
                 readsDataSource,
                 Collections.singletonList(interval),