From a810586418a152608fc662d7eaf58041a6ae8ced Mon Sep 17 00:00:00 2001 From: depristo Date: Tue, 15 Dec 2009 15:32:39 +0000 Subject: [PATCH] Check-in without javadoc = smackdown git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2359 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/playground/gatk/walkers/LocusMismatchWalker.java | 3 +++ 1 file changed, 3 insertions(+) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java index e519754ca..cbd9f312c 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java @@ -14,6 +14,9 @@ import org.broadinstitute.sting.utils.genotype.*; import java.util.*; +/** + * Walker to calculate the number of mismatches, their base counts, and their quality sums at confidence ref sites" + */ @By(DataSource.REFERENCE) public class LocusMismatchWalker extends LocusWalker implements TreeReducible { @Argument(fullName="confidentRefThreshold",doc="Set the lod score that defines confidence in ref, defaults to 4", required=false)