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Check-in without javadoc = smackdown 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2359 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2009-12-15 15:32:39 +00:00
parent b234019cf5
commit a810586418
1 changed files with 3 additions and 0 deletions
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3
java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java
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@ -14,6 +14,9 @@ import org.broadinstitute.sting.utils.genotype.*;
import java.util.*;
/**
* Walker to calculate the number of mismatches, their base counts, and their quality sums at confidence ref sites"
*/
@By(DataSource.REFERENCE)
public class LocusMismatchWalker extends LocusWalker<String,Integer> implements TreeReducible<Integer> {
@Argument(fullName="confidentRefThreshold",doc="Set the lod score that defines confidence in ref, defaults to 4", required=false)