calculating the md5s for the new tests.
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@ -89,14 +89,14 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
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@Test
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public void testHaplotypeCallerMultiSampleGGAComplex() {
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HCTestComplexGGA(CEUTRIO_BAM, "-L 20:119673-119823 -L 20:121408-121538",
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"aaaad25b22a551cae5d70ea30d7feed1");
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HCTestComplexGGA(NA12878_CHR20_BAM, "-L 20:119673-119823 -L 20:121408-121538",
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"8730a9ebaeecae913dca2fb5a0d4e946");
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}
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@Test
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public void testHaplotypeCallerMultiSampleGGAMultiAllelic() {
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HCTestComplexGGA(CEUTRIO_BAM, "-L 20:133041-133161 -L 20:300207-300337",
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"bbbbd25b22a551cae5d70ea30d7feed1");
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HCTestComplexGGA(NA12878_CHR20_BAM, "-L 20:133041-133161 -L 20:300207-300337",
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"1a034b7eb572e1b6f659d6e5d57b3e76");
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}
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private void HCTestComplexVariants(String bam, String args, String md5) {
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