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Fixing this so it gets the right 129 dbsnp for b37 samples 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5491 348d0f76-0448-11de-a6fe-93d51630548a
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corin 2011-03-22 17:43:20 +00:00
parent 5a79f16ea4
commit a6d873b268
1 changed files with 1 additions and 1 deletions
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2
shell/firehose/pipelineTsvToYaml.sh
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@ -125,7 +125,7 @@ awk '
# add hg19 specific files to awk associative arrays # add hg19 specific files to awk associative arrays
genotypeDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_132_b37.vcf" genotypeDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_132_b37.vcf"
evalDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_129_b37.rod" evalDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_129_b37.vcf"
refseqs["Homo_sapiens_assembly19.fasta"] = refseqDir "refGene-big-table-hg19.txt" refseqs["Homo_sapiens_assembly19.fasta"] = refseqDir "refGene-big-table-hg19.txt"
printf "{" printf "{"