From a6d873b26887e15e1351fe133212d8d2a6a73a53 Mon Sep 17 00:00:00 2001 From: corin Date: Tue, 22 Mar 2011 17:43:20 +0000 Subject: [PATCH] Fixing this so it gets the right 129 dbsnp for b37 samples git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5491 348d0f76-0448-11de-a6fe-93d51630548a --- shell/firehose/pipelineTsvToYaml.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/shell/firehose/pipelineTsvToYaml.sh b/shell/firehose/pipelineTsvToYaml.sh index 55fad225b..5fce320da 100755 --- a/shell/firehose/pipelineTsvToYaml.sh +++ b/shell/firehose/pipelineTsvToYaml.sh @@ -125,7 +125,7 @@ awk ' # add hg19 specific files to awk associative arrays genotypeDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_132_b37.vcf" - evalDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_129_b37.rod" + evalDbsnps["Homo_sapiens_assembly19.fasta"] = dbsnpDir "dbsnp_129_b37.vcf" refseqs["Homo_sapiens_assembly19.fasta"] = refseqDir "refGene-big-table-hg19.txt" printf "{"