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ROCCurve High Confidence Mode 

Integration Tests

Updated test

Changed method

Minor changes

Changed whitespace

Fixed uncalled counts and 0 in R

Fixed ReadBackedPileUp

Removed imports and changed MD5

Fixed failing test

Adding vqslod color

Updating script to create KB

Fixing integration test now that the KB is bigger

Adressing comments
This commit is contained in:
meganshand 2015-09-29 11:52:09 -04:00
parent 7b067c13bd
commit a57500b2fc
1 changed files with 1 additions and 0 deletions
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public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/GenomeLoc.java
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@ -62,6 +62,7 @@ public class GenomeLoc implements Comparable<GenomeLoc>, Serializable, HasGenome
// TODO - WARNING WARNING WARNING code somehow depends on the name of the contig being null!
public static final GenomeLoc UNMAPPED = new GenomeLoc((String)null);
public static final GenomeLoc WHOLE_GENOME = new GenomeLoc("all");
public static final GenomeLoc END_OF_GENOME = new GenomeLoc("Y", 23, 59347566, 59347566);
public static final boolean isUnmapped(GenomeLoc loc) {
return loc == UNMAPPED;