diff --git a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RegionalAssociationUnitTest.java b/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RegionalAssociationUnitTest.java index d2bd207ab..c046270b7 100755 --- a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RegionalAssociationUnitTest.java +++ b/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RegionalAssociationUnitTest.java @@ -46,7 +46,7 @@ public class RegionalAssociationUnitTest extends BaseTest { test4.setCaseData((Collection) Arrays.asList(14,8,8,17,8,12,10,10,13,9,13,9,9,12,12,11,16,12,13,16,10,13,11,16,13,16,11,13,9,16,16,14,9,14,17,10,15,15,9,15,17,15,17,12,10,13,11,14,8,14)); test4.setControlData((Collection) Arrays.asList(7,1,4,2,3,7,8,5,5,4,10,6,4,9,2,9,9,3,3,10,1,8,9,5,3,7,2,7,10,9,4,9,2,10,10,3,2,3,4,4,5,10,9,4,3,5,6,10,5,10)); Assert.assertEquals(AssociationTestRunner.getTestValues(test4).second.first,4.291725e-20,1e-19); - Assert.assertEquals(AssociationTestRunner.getTestValues(test4).first,11.60592,1e-5); + Assert.assertEquals(AssociationTestRunner.getTestValues(test4).first.first,11.60592,1e-5); } @Test @@ -55,16 +55,16 @@ public class RegionalAssociationUnitTest extends BaseTest { ZTest test1 = new ZTest(); test1.setCaseData(new Pair(100,500)); test1.setControlData(new Pair(55,300)); - Assert.assertEquals(AssociationTestRunner.getTestValues(test1).first,0.57742362050306,2e-6); + Assert.assertEquals(AssociationTestRunner.getTestValues(test1).first.first,0.57742362050306,2e-6); Assert.assertEquals(AssociationTestRunner.getTestValues(test1).second.first,0.56367,2e-5); ZTest test2 = new ZTest(); test1.setCaseData(new Pair(1020, 1800)); test1.setControlData(new Pair(680, 1670)); - Assert.assertEquals(AssociationTestRunner.getTestValues(test1).first,9.3898178216531,2e-6); + Assert.assertEquals(AssociationTestRunner.getTestValues(test1).first.first,9.3898178216531,2e-6); ZTest test3 = new ZTest(); test3.setCaseData(new Pair(20,60)); test3.setControlData(new Pair(30,80)); - Assert.assertEquals(AssociationTestRunner.getTestValues(test3).first,-0.50917511840392,2e-6); + Assert.assertEquals(AssociationTestRunner.getTestValues(test3).first.first,-0.50917511840392,2e-6); Assert.assertEquals(AssociationTestRunner.getTestValues(test3).second.first,0.610643593,2e-4); }