diff --git a/public/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java b/protected/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java
similarity index 100%
rename from public/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java
rename to protected/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java
diff --git a/public/java/test/org/broadinstitute/sting/gatk/EngineFeaturesIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/EngineFeaturesIntegrationTest.java
index 12c257796..8d0874ea1 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/EngineFeaturesIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/EngineFeaturesIntegrationTest.java
@@ -64,16 +64,16 @@ public class EngineFeaturesIntegrationTest extends WalkerTest {
     }
 
     @Test() private void testMissingBAMnt1() {
-        testMissingFile("missing BAM", "-T UnifiedGenotyper -I missing.bam -nt 1");
+        testMissingFile("missing BAM", "-T PrintReads -I missing.bam -nt 1");
     }
     @Test() private void testMissingBAMnt4() {
-        testMissingFile("missing BAM", "-T UnifiedGenotyper -I missing.bam -nt 4");
+        testMissingFile("missing BAM", "-T PrintReads -I missing.bam -nt 4");
     }
     @Test() private void testMissingVCF() {
         testMissingFile("missing VCF", "-T SelectVariants -V missing.vcf");
     }
     @Test() private void testMissingInterval() {
-        testMissingFile("missing interval", "-T UnifiedGenotyper -L missing.interval_list -I " + b37GoodBAM);
+        testMissingFile("missing interval", "-T PrintReads -L missing.interval_list -I " + b37GoodBAM);
     }
 
 
diff --git a/public/java/test/org/broadinstitute/sting/gatk/MaxRuntimeIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/MaxRuntimeIntegrationTest.java
index 7813c26be..55f9e1f7d 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/MaxRuntimeIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/MaxRuntimeIntegrationTest.java
@@ -71,7 +71,7 @@ public class MaxRuntimeIntegrationTest extends WalkerTest {
     @Test(enabled = true, dataProvider = "MaxRuntimeProvider", timeOut = 60 * 1000)
     public void testMaxRuntime(final MaxRuntimeTestProvider cfg) {
         WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
-                "-T UnifiedGenotyper -R " + hg18Reference
+                "-T PrintReads -R " + hg18Reference
                         + " -I " + validationDataLocation + "NA12878.WEx.downsampled20x.bam -o /dev/null"
                         + " -maxRuntime " + cfg.maxRuntime + " -maxRuntimeUnits " + cfg.unit, 0,
                 Collections.<String>emptyList());
diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/qc/DictionaryConsistencyIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/qc/DictionaryConsistencyIntegrationTest.java
index 88086314a..a813fada2 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/qc/DictionaryConsistencyIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/qc/DictionaryConsistencyIntegrationTest.java
@@ -75,7 +75,7 @@ public class DictionaryConsistencyIntegrationTest extends WalkerTest {
     @Test public void failBAM8() { executeTest("hg18bam-v-lexhg18", testBAM(lexHG18,        hg18BAM, "chr1", UserException.LexicographicallySortedSequenceDictionary.class)); }
 
     private WalkerTest.WalkerTestSpec testBAM(String ref, String bam, String contig, Class c) {
-        return new WalkerTest.WalkerTestSpec("-T UnifiedGenotyper -I " + bam + " -R " + ref +  " -L " + contig + ":10,000,000-11,000,000 -o %s",
+        return new WalkerTest.WalkerTestSpec("-T PrintReads -I " + bam + " -R " + ref +  " -L " + contig + ":10,000,000-11,000,000 -o %s",
                 1, c);
 
     }