Moved output outside of for loop so I don't have 10 different versions of the same variant (though, now that I think of it, that's not necessarily a terrible thing for debugging...

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1045 348d0f76-0448-11de-a6fe-93d51630548a

java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VariantFiltrationWalker.java

@@ -49,8 +49,9 @@ public class VariantFiltrationWalker extends LocusWalker<Integer, Integer> {
             else { throw new StingException(String.format("Cannot understand feature '%s'", featureName)); }
 
             variant.adjustLikelihoods(ivf.compute(ref, context));
-            vwriter.println(variant);
         }
+        
+        vwriter.println(variant);
 
         return 1;
     }