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Adding a GT header line to SomaticIndelDetector output

This commit is contained in:
Eric Banks 2012-06-12 09:39:17 -04:00
parent 891ce51908
commit a4defdfb29
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java
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@ -316,6 +316,7 @@ public class SomaticIndelDetectorWalker extends ReadWalker<Integer,Integer> {
// first, the basic info
headerInfo.add(new VCFHeaderLine("source", "SomaticIndelDetector"));
headerInfo.add(new VCFHeaderLine("reference", getToolkit().getArguments().referenceFile.getName()));
headerInfo.add(new VCFFormatHeaderLine(VCFConstants.GENOTYPE_KEY, 1, VCFHeaderLineType.String, "Genotype"));
// FORMAT and INFO fields
// headerInfo.addAll(VCFUtils.getSupportedHeaderStrings());