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Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3689 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-06-30 18:55:57 +00:00
parent 178cf64a0c
commit a46e22ed13
1 changed files with 6 additions and 3 deletions
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9
scala/src/org/broadinstitute/sting/queue/function/CommandLineFunction.scala
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@ -3,7 +3,7 @@ package org.broadinstitute.sting.queue.function
import org.broadinstitute.sting.queue.util._
import java.lang.reflect.Field
import java.lang.annotation.Annotation
import org.broadinstitute.sting.commandline.{Input, Output, ArgumentDescription}
import org.broadinstitute.sting.commandline.{Input, Output}
trait CommandLineFunction extends InputOutputFunction with DispatchFunction {
var properties = Map.empty[String, String]
@ -49,8 +49,11 @@ trait CommandLineFunction extends InputOutputFunction with DispatchFunction {
missing
}
private def isRequired(field: Field, annotation: Class[_ <: Annotation]) =
new ArgumentDescription(field.getAnnotation(annotation)).required
private def isRequired(field: Field, annotationClass: Class[_ <: Annotation]) =
getAnnotationValue(field.getAnnotation(annotationClass), "required").asInstanceOf[Boolean]
private def getAnnotationValue(annotation: Annotation, method: String) =
annotation.getClass.getMethod(method).invoke(annotation)
protected def hasFieldValue(field: Field) = hasValue(this.getFieldValue(field))