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Changed a default path 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3291 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
weisburd 2010-05-03 17:07:21 +00:00
parent 94b51de401
commit a462b5e1e7
1 changed files with 1 additions and 1 deletions
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2
python/genomicAnnotatorScripts/GenerateTranscriptToInfo.py
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@ -16,7 +16,7 @@ NOTE: This script must be run in the top level dir of your GATK checkout area.
parser = OptionParser( description=description, usage="usage: %prog [options] ", formatter=IndentedHelpFormatterWithNL())
parser.add_option("-d", "--refgene-directory", metavar="DIR", dest="refgene_dir", help="Specifies the directory that contains refGene-converted.txt", default="/humgen/gsa-hpprojects/GATK/data/Annotations/refseq/raw/")
parser.add_option("-d", "--refgene-directory", metavar="DIR", dest="refgene_dir", help="Specifies the directory that contains refGene-converted.txt", default="/humgen/gsa-hpprojects/GATK/data/Annotations/refseq/hg18_b36/raw/")
parser.add_option("-p", "--print", dest="output", action="store_true", default=False, help="Only print the commands to standard out, don't actually execute them yet.")
parser.add_option("-e", "--execute", dest="execute", action="store_true", default=False, help="Executes the commands. This flag acts as a confirmation that you want to proceed with launching the processes.")