diff --git a/java/src/org/broadinstitute/sting/playground/utils/TrioConcordanceRecord.java b/java/src/org/broadinstitute/sting/playground/utils/TrioConcordanceRecord.java index 904e88ae4..5f05f09e0 100644 --- a/java/src/org/broadinstitute/sting/playground/utils/TrioConcordanceRecord.java +++ b/java/src/org/broadinstitute/sting/playground/utils/TrioConcordanceRecord.java @@ -75,12 +75,12 @@ public class TrioConcordanceRecord { public String toString() { StringBuilder b = new StringBuilder(); - b.append(String.format("%ntotal assessed in trio: %d%n reference: %d (%3.2f)%n", assessed_loci, consistent_ref, Utils.percentage(consistent_ref,assessed_loci )) ); - b.append(String.format(" total snp sites: %d%n consistent snp: %d (%3.2f)%n multiallelic snp: %d (%3.2f)%n inconsistent snp: %d (%3.2f)%n", + b.append(String.format("%ntotal assessed in trio: %d%n reference: %d (%3.2f%%)%n", assessed_loci, consistent_ref, Utils.percentage(consistent_ref,assessed_loci )) ); + b.append(String.format(" total snp sites: %d%n consistent snp: %d (%3.2f%%)%n multiallelic snp: %d (%3.2f%%)%n inconsistent snp: %d (%3.2f%%)%n", totalSNP(), consistent_snp, Utils.percentage(consistent_snp,totalSNP() ), non_biallelic_snp, Utils.percentage(non_biallelic_snp,totalSNP()), inconsistent_snp, Utils.percentage(inconsistent_snp, totalSNP()) ) ); - b.append(String.format(" total indel sites: %d%n consistent indel: %d (%3.2f)%n multiallelic indel: %d (%3.2f)%n inconsistent indels: %d (%3.2f)%n missing from daughter: %d (%3.2f)%n missing from both parents: %d (%3.2f)%n", + b.append(String.format(" total indel sites: %d%n consistent indel: %d (%3.2f%%)%n multiallelic indel: %d (%3.2f%%)%n inconsistent indels: %d (%3.2f%%)%n missing from daughter: %d (%3.2f%%)%n missing from both parents: %d (%3.2f%%)%n", totalIndels(), consistent_indels, Utils.percentage(consistent_indels,totalIndels()), non_biallelic_indel, Utils.percentage(non_biallelic_indel, totalIndels()), inconsistent_indels, Utils.percentage(inconsistent_indels, totalIndels()),