diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/reads/BAMScheduler.java b/java/src/org/broadinstitute/sting/gatk/datasources/reads/BAMScheduler.java index 45aee6758..266232c0f 100644 --- a/java/src/org/broadinstitute/sting/gatk/datasources/reads/BAMScheduler.java +++ b/java/src/org/broadinstitute/sting/gatk/datasources/reads/BAMScheduler.java @@ -94,7 +94,7 @@ public class BAMScheduler implements Iterator { if(currentLocus == GenomeLoc.UNMAPPED) { nextFilePointer = new FilePointer(GenomeLoc.UNMAPPED); for(SAMReaderID id: dataSource.getReaderIDs()) - nextFilePointer.addFileSpans(id,null); + nextFilePointer.addFileSpans(id,new GATKBAMFileSpan()); currentLocus = null; continue; }