Adding two new output options in HaplotypeCaller for Menachem. The first controls the look ahead distance for turning consecutive SNPs into MNPs and the second outputs the full haplotype sequence for the active region instead of using Smith Waterman to find all the variants and output them in individual VCF records.

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Ryan Poplin 2012-03-30 14:09:38 -04:00

parent 11645568a8

commit a36f4570c4

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