From a318b1871d052d4721ac39fde9e9871ef585fc7e Mon Sep 17 00:00:00 2001 From: weisburd Date: Fri, 30 Apr 2010 21:29:34 +0000 Subject: [PATCH] Removed unused column git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3285 348d0f76-0448-11de-a6fe-93d51630548a --- .../playground/gatk/walkers/annotator/TranscriptToInfo.java | 2 -- 1 file changed, 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/TranscriptToInfo.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/TranscriptToInfo.java index 2255951a9..2c099f8f9 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/TranscriptToInfo.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/TranscriptToInfo.java @@ -81,7 +81,6 @@ public class TranscriptToInfo extends RodWalker, TreeMap public static final String OUTPUT_POSITION_TYPE = "positionType"; //eg. utr5, cds, utr3, intron, intergenic public static final String OUTPUT_MRNA_COORD = "mrnaCoord"; //1-based offset within the transcript - public static final String OUTPUT_CODING_COORD = "codingCoord"; //1-based offset within the cds region public static final String OUTPUT_SPLICE_DISTANCE = "spliceDist"; //eg. integer, bp to nearest exon/intron boundary @@ -117,7 +116,6 @@ public class TranscriptToInfo extends RodWalker, TreeMap OUTPUT_FRAME, OUTPUT_MRNA_COORD, - OUTPUT_CODING_COORD, OUTPUT_CODON_NUMBER, OUTPUT_SPLICE_DISTANCE,