diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java index b10486e50..2b7db8d34 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java @@ -64,7 +64,7 @@ public class PrintReadsWalker extends ReadWalker { public Set sampleNames = new TreeSet(); private TreeSet samplesToChoose = new TreeSet(); - private boolean NO_SAMPLES_SPECIFIED = false; + private boolean SAMPLES_SPECIFIED = false; /** * The initialize function. @@ -82,8 +82,8 @@ public class PrintReadsWalker extends ReadWalker { if (!sampleNames.isEmpty()) samplesToChoose.addAll(sampleNames); - if(samplesToChoose.isEmpty()) { - NO_SAMPLES_SPECIFIED = true; + if(!samplesToChoose.isEmpty()) { + SAMPLES_SPECIFIED = true; } } @@ -112,7 +112,7 @@ public class PrintReadsWalker extends ReadWalker { if ( readPlatformAttr == null || !readPlatformAttr.toString().toUpperCase().contains(platform)) return false; } - if (!NO_SAMPLES_SPECIFIED ) { + if (SAMPLES_SPECIFIED ) { // user specified samples to select String readSample = read.getReadGroup().getSample(); boolean found = false;