zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

New debug option to output the assembly graph in dot format. Merge nodes in assembly graph when possible.

This commit is contained in:
Ryan Poplin 2012-03-21 15:48:55 -04:00
parent 9e10779fa7
commit a29fc6311a
2 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
public/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
View File

@ -500,7 +500,7 @@ public class PairHMMIndelErrorModel {
if (stop > ref.getWindow().getStop())
stop = ref.getWindow().getStop();
// if there's an insertion in the read, the read stop position will be less than start + read legnth,
// if there's an insertion in the read, the read stop position will be less than start + read length,
// but we want to compute likelihoods in the whole region that a read might overlap
if (stop <= start + readLength) {
stop = start + readLength-1;

2
public/java/src/org/broadinstitute/sting/utils/MathUtils.java
View File

@ -205,7 +205,7 @@ public class MathUtils {
/**
* Calculates the log10 cumulative sum of an array with log10 probabilities
*
* @param log10p the array with log10 probabilites
* @param log10p the array with log10 probabilities
* @param upTo index in the array to calculate the cumsum up to
* @return the log10 of the cumulative sum
*/