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Yikes. Fixing the build 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5794 348d0f76-0448-11de-a6fe-93d51630548a
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rpoplin 2011-05-12 01:52:35 +00:00
parent 40797f9d45
commit a22e98a2c4
1 changed files with 3 additions and 1 deletions
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4
java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java
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@ -118,7 +118,9 @@ public class VariantDataManager {
} }
} }
logger.info( "Training with " + trainingData.size() + " variants after standard deviation thresholding." ); logger.info( "Training with " + trainingData.size() + " variants after standard deviation thresholding." );
if( trainingData.size() < ) if( trainingData.size() < VRAC.MIN_NUM_BAD_VARIANTS ) {
logger.warn("WARNING: Training with very few variant sites! Please check the model reporting PDF to ensure the quality of the model is reliable.");
}
return trainingData; return trainingData;
} }