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Should've run 'ant clean' instead of just 'ant'. In any event, these are 2 cases where we are setting a class's internal static variable directly. Very dangerous.

This commit is contained in:
Eric Banks 2012-08-16 15:07:32 -04:00
parent 47b4f7b7e5
commit a22e7a5358
2 changed files with 2 additions and 2 deletions
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2
public/java/src/org/broadinstitute/sting/utils/baq/BAQ.java
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@ -68,7 +68,7 @@ public class BAQ {
} }
// Phred scaled now (changed 1/10/2011) // Phred scaled now (changed 1/10/2011)
public static final double DEFAULT_GOP = 40; public static double DEFAULT_GOP = 40;
/* Takes a Phred Scale quality score and returns the error probability. /* Takes a Phred Scale quality score and returns the error probability.
* *

2
public/java/src/org/broadinstitute/sting/utils/variantcontext/GenotypeBuilder.java
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@ -53,7 +53,7 @@ import java.util.*;
*/ */
@Invariant({"alleles != null"}) @Invariant({"alleles != null"})
public final class GenotypeBuilder { public final class GenotypeBuilder {
public static final boolean MAKE_FAST_BY_DEFAULT = true; public static boolean MAKE_FAST_BY_DEFAULT = true;
private String sampleName = null; private String sampleName = null;
private List<Allele> alleles = Collections.emptyList(); private List<Allele> alleles = Collections.emptyList();