diff --git a/public/java/src/org/broadinstitute/sting/utils/baq/BAQ.java b/public/java/src/org/broadinstitute/sting/utils/baq/BAQ.java index f37451cba..439a0d8ed 100644 --- a/public/java/src/org/broadinstitute/sting/utils/baq/BAQ.java +++ b/public/java/src/org/broadinstitute/sting/utils/baq/BAQ.java @@ -68,7 +68,7 @@ public class BAQ { } // Phred scaled now (changed 1/10/2011) - public static final double DEFAULT_GOP = 40; + public static double DEFAULT_GOP = 40; /* Takes a Phred Scale quality score and returns the error probability. * diff --git a/public/java/src/org/broadinstitute/sting/utils/variantcontext/GenotypeBuilder.java b/public/java/src/org/broadinstitute/sting/utils/variantcontext/GenotypeBuilder.java index c18f954a2..e3bef6bc5 100755 --- a/public/java/src/org/broadinstitute/sting/utils/variantcontext/GenotypeBuilder.java +++ b/public/java/src/org/broadinstitute/sting/utils/variantcontext/GenotypeBuilder.java @@ -53,7 +53,7 @@ import java.util.*; */ @Invariant({"alleles != null"}) public final class GenotypeBuilder { - public static final boolean MAKE_FAST_BY_DEFAULT = true; + public static boolean MAKE_FAST_BY_DEFAULT = true; private String sampleName = null; private List alleles = Collections.emptyList();